PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g001110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TALE
Protein Properties Length: 323aa    MW: 36992 Da    PI: 4.5214
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g001110.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.2e-092662982355
                       SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yp+++++  LA+++gL+ +q+ +WF N+R ++
  Sopen05g001110.1 266 PYPTEADKNSLAESTGLDPKQINNWFINQRKRH 298
                       8*****************************885 PP

2ELK31.34.7e-11218239122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK++LlrK++++L+sLk EFs
  Sopen05g001110.1 218 ELKDRLLRKFGSHLSSLKLEFS 239
                       9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.6E-1892136IPR005540KNOX1
PfamPF037908.0E-2194135IPR005540KNOX1
SMARTSM012561.1E-25142193IPR005541KNOX2
PfamPF037911.0E-24145192IPR005541KNOX2
PROSITE profilePS5121310.196218238IPR005539ELK domain
SMARTSM011888.4E-6218239IPR005539ELK domain
PfamPF037891.3E-7218239IPR005539ELK domain
PROSITE profilePS5007112.908238301IPR001356Homeobox domain
SuperFamilySSF466891.28E-19239312IPR009057Homeodomain-like
SMARTSM003891.5E-13240305IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-28243302IPR009057Homeodomain-like
CDDcd000867.13E-12250302No hitNo description
PfamPF059202.8E-17258297IPR008422Homeobox KN domain
PROSITE patternPS000270276299IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDDEIMYGFN STRDDYADKA LMSPENLMMQ TEYNNFHNYT NSSIMFGSDP IQLSSEQTLQ  60
NNIYRGNCGG GSGSGDNNNN NNNNNNDEDG SNVIKAKILS HPYYPQLLNA YIDCQKVGAP  120
AGIVNLLEEI RQQNDFRKPN ATSMCIGADP ELDEFMETYC DILLKYKSDL SRPFDEATTF  180
LNKIEMQLGN LCKDDDDDVD EELSCGDASS MRRSEDNELK DRLLRKFGSH LSSLKLEFSK  240
KKKKGKLPKE ARQMLLAWWD DHFRWPYPTE ADKNSLAEST GLDPKQINNW FINQRKRHWK  300
PSENMQLAVM DNLSAQFFSS DVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLEU764080.0U76408.1 Lycopersicon esculentum knotted 3 protein (TKn3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075207.10.0PREDICTED: homeobox protein knotted-1-like 2 isoform X1
SwissprotQ84JS61e-111KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLK4BW400.0K4BW40_SOLLC; Uncharacterized protein
STRINGSolyc05g005090.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-98KNOTTED1-like homeobox gene 6